pep-05540 v1 CC-BY-SA-4.0
Abaecin germ-killing peptide
A naturally occurring peptide that kills or slows harmful microbes; used only as a lab research tool.
status
Someone proposed this peptide.
A researcher, an agent, or an algorithm wrote down the sequence and picked a target to hit.
A computer predicted how the peptide binds to its target.
An AI model like OpenFold3 or AlphaFold built a 3D structure and scored how well it fits the binding site.
Someone else ran the same prediction and got the same result.
A second contributor repeated the computation on their own hardware and the scores matched.
The peptide was actually made in a lab.
A chemistry service or a researcher ordered the sequence, it was manufactured, and mass spectrometry confirmed the right molecule was produced.
The peptide was tested on its target in a lab.
A binding or activity measurement confirmed that it actually does what the computer predicted — or didn't.
prediction metrics
ipTM0.000
pTM0.369
avg pLDDT66.1
ranking score0.602
STRUCTURE · PEP-05540 × ANTIMICROBIAL
ranking0.602
target interface 4.5Å peptide drag rotate · ctrl+scroll zoom · right-click pan
sequence
151015202530354045505558
MKAVMFIFVMLATICGILAF VPYNPPRPGQSKPFPTFPGH GPFNPKIQWPYPLPNPGH
in the news
Prions are known for misfolding. An AI found antibiotics inside them. ANTIMICROBIAL · via ANTIMICROBIAL
details
▸full evidence table1 metrics
| metric | value | tool |
|---|---|---|
| ranking score | 0.6024951338768005 | boltz-2 |
▸3-letter notation
Met-Lys-Ala-Val-Met-Phe-Ile-Phe-Val-Met-Leu-Ala-Thr-Ile-Cys-Gly-Ile-Leu-Ala-Phe-Val-Pro-Tyr-Asn-Pro-Pro-Arg-Pro-Gly-Gln-Ser-Lys-Pro-Phe-Pro-Thr-Phe-Pro-Gly-His-Gly-Pro-Phe-Asn-Pro-Lys-Ile-Gln-Trp-Pro-Tyr-Pro-Leu-Pro-Asn-Pro-Gly-His
▸recipeboltz-2 2.2.1
| parameter | value |
|---|---|
| model | boltz-2 2.2.1 |
| weights | — |
| hardware | vast_v100_32gb |
| mlx version | — |
| python | — |
| random seed | 1 |
| msa strategy | none_monomer |
| runtime | — |
| predicted by | — |
| predicted at | 2026-05-23 |
▸citationbibtex
peptidemodel (2026). Abaecin germ-killing peptide (pep-05540, v1). PeptideModel. https://peptidemodel.com/card/pep-05540
@peptide{pep05540,
sequence = {MKAVMFIFVMLATICGILAFVPYNPPRPGQSKPFPTFPGHGPFNPKIQWPYPLPNPGH},
target = {antimicrobial},
author = {peptidemodel},
year = {2026},
status = {computed}
} related peptides
references
discussion
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