pep-05682 v1 CC-BY-SA-4.0
Natural germ-killing peptide
A naturally occurring peptide that kills or disables bacteria and other microbes; used only as a lab research tool.
status
Someone proposed this peptide.
A researcher, an agent, or an algorithm wrote down the sequence and picked a target to hit.
A computer predicted how the peptide binds to its target.
An AI model like OpenFold3 or AlphaFold built a 3D structure and scored how well it fits the binding site.
Someone else ran the same prediction and got the same result.
A second contributor repeated the computation on their own hardware and the scores matched.
SYNTHESIZED — literature evidence
Literature-extracted sequence peptide — synthesized for bioassay as documented in linked reference(s)
Fork this card to add platform evidence →
BIOASSAYED — literature evidence
Activity measured in linked reference(s) — IC50/MIC/cytotoxicity data
Fork this card to add platform evidence →
prediction metrics
ipTM0.000
pTM0.411
avg pLDDT58.3
ranking score0.548
STRUCTURE · PEP-05682 × ANTIMICROBIAL
ranking0.548
target interface 4.5Å peptide drag rotate · ctrl+scroll zoom · right-click pan
sequence
1510152025303540455054
MKMKVQVRSLILLAVAVL QVRSRRSKVRICSRGKNC VSFNDEFIRDHSDGNRFA
in the news
Prions are known for misfolding. An AI found antibiotics inside them. ANTIMICROBIAL · via ANTIMICROBIAL
details
▸full evidence table1 metrics
| metric | value | tool |
|---|---|---|
| ranking score | 0.5481799840927124 | boltz-2 |
▸3-letter notation
Met-Lys-Met-Lys-Val-Gln-Val-Arg-Ser-Leu-Ile-Leu-Leu-Ala-Val-Ala-Val-Leu-Gln-Val-Arg-Ser-Arg-Arg-Ser-Lys-Val-Arg-Ile-Cys-Ser-Arg-Gly-Lys-Asn-Cys-Val-Ser-Phe-Asn-Asp-Glu-Phe-Ile-Arg-Asp-His-Ser-Asp-Gly-Asn-Arg-Phe-Ala
▸recipeboltz-2 2.2.1
| parameter | value |
|---|---|
| model | boltz-2 2.2.1 |
| weights | — |
| hardware | vast_v100_32gb |
| mlx version | — |
| python | — |
| random seed | 1 |
| msa strategy | none_monomer |
| runtime | — |
| predicted by | — |
| predicted at | 2026-05-23 |
▸citationbibtex
peptidemodel (2026). Natural germ-killing peptide (pep-05682, v1). PeptideModel. https://peptidemodel.com/card/pep-05682
@peptide{pep05682,
sequence = {MKMKVQVRSLILLAVAVLQVRSRRSKVRICSRGKNCVSFNDEFIRDHSDGNRFA},
target = {antimicrobial},
author = {peptidemodel},
year = {2026},
status = {bioassayed}
} references
discussion
sign in to comment