pep-05617 v1 CC-BY-SA-4.0
Plant defensin-like antimicrobial peptide
A naturally derived peptide that kills or slows bacteria and other microbes; used only as a lab research tool.
status
Someone proposed this peptide.
A researcher, an agent, or an algorithm wrote down the sequence and picked a target to hit.
A computer predicted how the peptide binds to its target.
An AI model like OpenFold3 or AlphaFold built a 3D structure and scored how well it fits the binding site.
Someone else ran the same prediction and got the same result.
A second contributor repeated the computation on their own hardware and the scores matched.
SYNTHESIZED — literature evidence
Literature-extracted sequence peptide — synthesized for bioassay as documented in linked reference(s)
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BIOASSAYED — literature evidence
Activity measured in linked reference(s) — IC50/MIC/cytotoxicity data
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prediction metrics
ipTM0.000
pTM0.679
avg pLDDT72.7
ranking score0.717
STRUCTURE · PEP-05617 × ANTIMICROBIAL
ranking0.717
target interface 4.5Å peptide drag rotate · ctrl+scroll zoom · right-click pan
sequence
151015202530354045505556
LSNSDILVSSVIET SKYDVCFIPCTRRY EDRECNDDCLAKDF NDGGCVDGRCCCKY
in the news
Prions are known for misfolding. An AI found antibiotics inside them. ANTIMICROBIAL · via ANTIMICROBIAL
details
▸full evidence table1 metrics
| metric | value | tool |
|---|---|---|
| ranking score | 0.7171798944473267 | boltz-2 |
▸3-letter notation
Leu-Ser-Asn-Ser-Asp-Ile-Leu-Val-Ser-Ser-Val-Ile-Glu-Thr-Ser-Lys-Tyr-Asp-Val-Cys-Phe-Ile-Pro-Cys-Thr-Arg-Arg-Tyr-Glu-Asp-Arg-Glu-Cys-Asn-Asp-Asp-Cys-Leu-Ala-Lys-Asp-Phe-Asn-Asp-Gly-Gly-Cys-Val-Asp-Gly-Arg-Cys-Cys-Cys-Lys-Tyr
▸recipeboltz-2 2.2.1
| parameter | value |
|---|---|
| model | boltz-2 2.2.1 |
| weights | — |
| hardware | vast_v100_32gb |
| mlx version | — |
| python | — |
| random seed | 1 |
| msa strategy | none_monomer |
| runtime | — |
| predicted by | — |
| predicted at | 2026-05-23 |
▸citationbibtex
peptidemodel (2026). Plant defensin-like antimicrobial peptide (pep-05617, v1). PeptideModel. https://peptidemodel.com/card/pep-05617
@peptide{pep05617,
sequence = {LSNSDILVSSVIETSKYDVCFIPCTRRYEDRECNDDCLAKDFNDGGCVDGRCCCKY},
target = {antimicrobial},
author = {peptidemodel},
year = {2026},
status = {bioassayed}
} related peptides
references
discussion
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