pep-05605 v1 CC-BY-SA-4.0
Pediocin PA-1 germ-killing peptide
A short protein fragment that kills bacteria and other microbes; used only as a lab research tool.
status
Someone proposed this peptide.
A researcher, an agent, or an algorithm wrote down the sequence and picked a target to hit.
A computer predicted how the peptide binds to its target.
An AI model like OpenFold3 or AlphaFold built a 3D structure and scored how well it fits the binding site.
Someone else ran the same prediction and got the same result.
A second contributor repeated the computation on their own hardware and the scores matched.
SYNTHESIZED — literature evidence
Literature-extracted sequence peptide — synthesized for bioassay as documented in linked reference(s)
Fork this card to add platform evidence →
BIOASSAYED — literature evidence
Activity measured in linked reference(s) — IC50/MIC/cytotoxicity data
Fork this card to add platform evidence →
prediction metrics
ipTM0.000
pTM0.490
avg pLDDT58.9
ranking score0.569
STRUCTURE · PEP-05605 × ANTIMICROBIAL
ranking0.569
target interface 4.5Å peptide drag rotate · ctrl+scroll zoom · right-click pan
sequence
151015202530354045505556
MMKKIEKLTEKEMA NIIGGKYYGNGVTC GKHSCSVNWGQAFS CSVSHLANFGHGKC
in the news
Prions are known for misfolding. An AI found antibiotics inside them. ANTIMICROBIAL · via ANTIMICROBIAL
details
▸full evidence table1 metrics
| metric | value | tool |
|---|---|---|
| ranking score | 0.5692823529243469 | boltz-2 |
▸3-letter notation
Met-Met-Lys-Lys-Ile-Glu-Lys-Leu-Thr-Glu-Lys-Glu-Met-Ala-Asn-Ile-Ile-Gly-Gly-Lys-Tyr-Tyr-Gly-Asn-Gly-Val-Thr-Cys-Gly-Lys-His-Ser-Cys-Ser-Val-Asn-Trp-Gly-Gln-Ala-Phe-Ser-Cys-Ser-Val-Ser-His-Leu-Ala-Asn-Phe-Gly-His-Gly-Lys-Cys
▸recipeboltz-2 2.2.1
| parameter | value |
|---|---|
| model | boltz-2 2.2.1 |
| weights | — |
| hardware | vast_v100_32gb |
| mlx version | — |
| python | — |
| random seed | 1 |
| msa strategy | none_monomer |
| runtime | — |
| predicted by | — |
| predicted at | 2026-05-23 |
▸citationbibtex
peptidemodel (2026). Pediocin PA-1 germ-killing peptide (pep-05605, v1). PeptideModel. https://peptidemodel.com/card/pep-05605
@peptide{pep05605,
sequence = {MMKKIEKLTEKEMANIIGGKYYGNGVTCGKHSCSVNWGQAFSCSVSHLANFGHGKC},
target = {antimicrobial},
author = {peptidemodel},
year = {2026},
status = {bioassayed}
} related peptides
references
discussion
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