pe
pep-10425 v1 CC-BY-SA-4.0

Pain-blocking opioid research peptide (CHEMBL1927270)

A lab-made compound that switches on the brain's opioid receptors, copying the pain-relieving effect of the body's own opioid molecules; used only as a research tool.

statusbioassayed targetOPRD1 length3 aa refs5
status 5 / 5
prediction metrics boltz-2 1.0
ipTM0.893
pTM0.882
avg pLDDT84.0
ranking score0.851
STRUCTURE · PEP-10425 × OPRD1
ranking0.851
target interface 4.5Å peptide drag rotate · ctrl+scroll zoom · right-click pan
boltz-2 1.0 · mmCIF ↓ download
sequence3 aa
13
FFD
overview readme

What this is

This card describes a research-only synthetic peptide (ChEMBL identifier CHEMBL1927270) developed by Anna Janecka's medicinal-chemistry group at the Medical University of Łódź as part of a programme building short, cyclic analogs of the brain's own opioid peptides. The stored "FFD" sequence shows only the Phe-Phe-Asp portion of the molecule; the actual compound is a cyclic pseudo-tetrapeptide built on the endomorphin-2 / morphiceptin scaffold (Tyr-Pro-Phe-Phe-NH₂), in which a Tyr–D-Lys "address" segment is fused through two side-chain amide bridges to a Phe-Phe-Asp-amide "message" segment (ChEMBL HELM record; Fichna and colleagues 2011). It is a laboratory tool compound for studying opioid receptors — not a drug, not in clinical development, and not approved for any use.

History

The endogenous tetrapeptides endomorphin-1 (Tyr-Pro-Trp-Phe-NH₂) and endomorphin-2 (Tyr-Pro-Phe-Phe-NH₂) were proposed as the brain's own high-affinity, highly selective agonists of the μ-opioid receptor. Their potential as analgesics with potentially cleaner side-effect profiles than morphine drove a decade of structure-activity work aimed at protecting them from rapid enzymatic breakdown and improving their ability to reach the brain after systemic dosing. Cyclisation of the linear backbone is one of the main strategies the Janecka group and collaborators used to address this stability problem (Fichna and colleagues 2011; Piekielna and colleagues 2014; Perlikowska and colleagues 2016; Adamska-Bartłomiejczyk and colleagues 2017). This compound is one product of that programme.

What it does

In binding assays it acts predominantly at the μ-opioid receptor (MOR, gene OPRM1) — the same receptor activated by morphine and by the endogenous endomorphins — with much weaker affinity at the δ-opioid receptor (DOR, gene OPRD1) and detectable affinity at the κ-opioid receptor (KOR). After intracerebroventricular injection in mice it produced antinociception in the paw-licking test, and a follow-up study reported antinociceptive activity after systemic (intraperitoneal) administration, indicating that the cyclic scaffold survives long enough in plasma to reach the brain (Fichna and colleagues 2011; Perlikowska and colleagues 2016).

Evidence

  • Human: No human trials. The compound has not entered clinical development.
  • Animal: Active in mouse antinociception models after central administration in the paw-licking assay (Fichna and colleagues, Bioorganic & Medicinal Chemistry 2011) and active after systemic intraperitoneal dosing in mouse pain models in a follow-up cyclic-analog series (Perlikowska and colleagues, European Journal of Medicinal Chemistry 2016).
  • In vitro: In rat-brain radioligand binding, the compound displaced [³H]DAMGO from MOR with IC50 ≈ 0.56 nM and [³H][Ile⁵,⁶]deltorphin-2 from DOR with IC50 ≈ 279 nM, giving roughly 498-fold MOR-over-DOR selectivity; brain-homogenate half-life was ≈ 6 h at the test concentration, much longer than the parent endomorphin-2 (Fichna and colleagues 2011). A separate evaluation reported MOR Ki ≈ 0.35 nM, DOR Ki ≈ 171 nM and KOR Ki ≈ 1.1 nM (Perlikowska and colleagues 2016). All affinity values are from rat or guinea-pig tissue binding assays as deposited in ChEMBL.

A note on the card metadata: the stored sequence "FFD" is the linear three-residue fragment that the platform's sequence field can represent in single-letter code. The biologically active molecule additionally contains an N-terminal Tyr (the canonical opioid-pharmacophore "message" residue), a D-Lys, two side-chain-to-side-chain amide bridges that lock the structure into a cycle-in-cycle scaffold, and a C-terminal carboxamide on the Asp. The card's primary-target list includes both OPRD1 and OPRM1, but the verified pharmacology in the source paper is MOR-selective.

Known effects

  • MOR binding (high affinity) — Sub-nanomolar in rat brain (Fichna 2011; Perlikowska 2016)
  • DOR binding (weak) — Nanomolar-to-submicromolar; ≈ 500-fold weaker than MOR (Fichna 2011)
  • KOR binding — Low-nanomolar in guinea-pig brain (Perlikowska 2016)
  • Antinociception, central administration — Mouse paw-licking, intracerebroventricular dose (Fichna 2011)
  • Antinociception, systemic administration — Mouse, intraperitoneal dose (Perlikowska 2016)

Regulatory status

  • US / EU: Not approved. Research compound only; no IND, no marketing authorisation in any jurisdiction.
  • Clinical development: None. No registered clinical trials.
  • WADA: Not individually listed. Synthetic μ-opioid receptor agonists fall under the general framework for narcotics during competition (S7) when used in vivo; this is a research peptide, not a clinical product, and the compound itself is not on the WADA prohibited list.

Related peptides

This compound sits inside a wider catalog of designed short opioid peptides on the platform. Most platform cards for individual ChEMBL research ligands in this series do not carry hand-written context; the structurally and pharmacologically closest reference points are the natural μ-opioid tetrapeptides endomorphin-1 and endomorphin-2 and the casein-derived μ-opioid tetrapeptide morphiceptin (Tyr-Pro-Phe-Pro-NH₂), all of which served as the parent scaffolds for this design programme.

Hypotheses5 directions▾ collapse

Research directions for this peptide, selected from the current sources — hypotheses you can explore and model. None of it is proven yet; tap any one to see the full thinking.

openupdated 2026-06-05

Could this compound be hitting two different pain-blocking targets in the brain at the same time?

If true, it would mean the compound's pain-relieving effect works differently from morphine, which only acts on one receptor. That difference could matter for how quickly tolerance builds and whether the drug causes the mood-darkening side effects tied to the second receptor type.

The hypothesis
This compound, despite its high MOR binding affinity (Ki approximately 0.35 nM), produces analgesic effects in vivo at least partly through KOR agonism (Ki approximately 1.1 nM), such that co-administration of a selective KOR antagonist would reduce its antinociceptive potency more than the approximately 500-fold MOR-over-DOR binding ratio would predict.
Why it’s plausible
Perlikowska and colleagues (2016) measured KOR Ki of approximately 1.1 nM, making this compound effectively a dual MOR/KOR agonist in binding terms, even though it is described as MOR-selective relative to DOR. KOR agonists have well-documented spinal antinociceptive activity, and a 1.1 nM Ki at KOR is pharmacologically meaningful. The in vivo antinociception studies (paw-licking, hot-plate) have not been dissected with receptor-selective antagonists in the published literature, so the KOR contribution is unresolved. The Perlikowska paper additionally notes that the parent analog of this series was a mixed MOR/KOR full agonist.
Why it matters
If KOR contributes substantially to in vivo efficacy, the analgesic mechanism differs from morphine's purely MOR-driven profile, with implications for tolerance development, dysphoria liability, and supraspinal vs. spinal site of action.
Plausibility.73
Novelty.63
Impact.71
Basis · grounding2 papers · 1 computed/note
[1]
paper
KOR Ki approximately 1.1 nM reported; parent compound of the series was a mixed MOR/KOR full agonist with similar potency at both receptors
doi: 10.1016/j.ejmech.2015.12.012
[2]
paper
Antinociception tested in paw-licking and hot-plate assays after ICV injection; no receptor-selective antagonist dissection reported
doi: 10.1016/j.bmc.2011.10.040
[3]
noteReadme confirms KOR binding is detectable (low nanomolar in guinea-pig brain) but the functional contribution to in vivo analgesia has not been evaluated
openupdated 2026-06-05

Can we identify exactly which section of this molecular ring makes the drug stick to the intended pain receptor and not to others?

If this structural segment turns out to be the selectivity switch, chemists could dial the drug's receptor preference up or down on purpose. That kind of precision could eventually lead to painkillers with fewer off-target side effects.

The hypothesis
The conformational rigidity of the Phe-Phe-Asp segment in the cycle-in-macrocycle scaffold is the primary structural determinant of the approximately 500-fold MOR-over-DOR selectivity, such that linearizing or expanding the ring at this segment would selectively erode MOR potency while partially restoring DOR affinity.
Why it’s plausible
MD simulations reported by Adamska-Bartlomiejczyk and colleagues (2017) show the Phe-Xaa-Asp portion is the rigid core of the bicyclic scaffold, while the Tyr-Lys region is flexible. The DOR crystal-structure context in the same paper (10.1016/j.bmc.2014.10.022) shows that the Phe4 side chain is forced into a polar DOR cavity flanked by Gln105, Lys108, Tyr109, and Tyr308, creating unfavorable steric contacts that account for low DOR affinity. If the rigidity of this segment is what prevents the conformational adjustment needed to avoid those DOR contacts, then ring expansion at Phe-Phe-Asp should relieve the constraint and increase DOR affinity at the cost of MOR binding geometry.
Why it matters
Identifying which ring constrains selectivity vs. potency would allow rational tuning of the MOR/DOR ratio across the scaffold series, relevant both for pure MOR analgesics and for mixed-receptor compounds with potentially reduced tolerance liability.
Plausibility.61
Novelty.65
Impact.70
Basis · grounding3 papers
[1]
paper
MD simulations show Phe-Xaa-Asp portion is more rigid than Tyr-Lys region; cis/trans isomerism in the Phe-Pro amide bond affects phenyl side-chain display
doi: 10.1016/j.bmc.2017.02.057
[2]
paper
Docking model shows Phe4 forced into polar DOR cavity (Gln105, Lys108, Tyr109, Tyr308) creating unfavorable contacts that explain low DOR affinity
doi: 10.1016/j.bmc.2014.10.022
[3]
paper
Approximately 498-fold MOR-over-DOR selectivity (IC50 0.56 nM vs 279 nM) measured by radioligand binding in rat brain
doi: 10.1016/j.bmc.2011.10.040
openupdated 2026-06-05

Does the molecule flip between two shapes, and does only one of those shapes actually bind tightly to the pain receptor?

If one shape is responsible for almost all the activity, drug makers could engineer a version that is locked into that shape, making dosing more predictable and potentially more effective. Right now, mixtures of both shapes make it harder to understand what the drug is really doing.

The hypothesis
The cis/trans isomerism of the Phe-Pro amide bond that creates two distinct HPLC peaks and reversed phenyl side-chain orientations in related 17-membered ring analogs of this scaffold confers measurably different MOR binding affinities to the two conformers, such that the higher-affinity conformer accounts for most of the observed sub-nanomolar potency.
Why it’s plausible
Adamska-Bartlomiejczyk and colleagues (2017) document that 17-membered ring cyclopeptides in this scaffold family appear as two HPLC peaks consistent with cis/trans Phe-Pro amide isomers, with conformers differing in the orientation of the Phe phenyl side chain. Since the Tyr-Pro-Phe-Phe pharmacophore requires a specific spatial presentation of the N-terminal Tyr and both Phe residues for MOR binding (established from endomorphin SAR), opposite display of the Phe phenyl ring should substantially alter MOR binding geometry. The reported Ki values (0.35-0.56 nM) are likely measured on a mixture or a single isolated conformer; the contribution of conformer identity to this potency has not been directly reported.
Why it matters
If one conformer dominates potency, synthetic strategies that lock the preferred conformation (e.g., N-methylation, further constraint) could yield a single-isomer analogue with improved and predictable MOR potency, reducing the pharmacological ambiguity inherent in isomeric mixtures.
Plausibility.55
Novelty.67
Impact.60
Basis · grounding2 papers · 1 computed/note
[1]
paper
Cis/trans Phe-Pro amide bond interconversion produces two distinct HPLC peaks and reversed Phe phenyl orientation in conformers A and B of related 17-membered ring analogs
doi: 10.1016/j.bmc.2017.02.057
[2]
paper
Sub-nanomolar MOR binding (IC50 0.56 nM) measured; conformer composition of tested sample not specified
doi: 10.1016/j.bmc.2011.10.040
[3]
sequenceFull scaffold contains Phe-Phe-Asp message segment and Tyr-D-Lys address segment constrained by two side-chain amide bridges
openupdated 2026-06-05

If we shorten one building block in the molecular ring by a few atoms, could we get a cleaner, single-shape molecule that still blocks pain just as powerfully?

A molecule that exists as one stable shape rather than two interconverting forms is simpler to study, easier to develop into a drug, and more straightforward to assess for safety. This could speed up the path from research compound to clinical tool.

The hypothesis
Replacing the D-Lys residue in the address segment with a D-ornithine or D-diaminobutyric acid shortens the ring-closing side-chain tether, tightening the macrocyclic ring and eliminating the cis/trans isomerism observed at the Phe-Pro bond, while preserving or improving MOR binding affinity relative to this compound.
Why it’s plausible
The molecular architecture uses two side-chain amide bridges; the Tyr-D-Lys segment is the flexible portion of the molecule (MD data, 10.1016/j.bmc.2017.02.057) and the D-Lys epsilon-amine provides one bridge point. Shortening the D-Lys side chain by one or two carbons (D-ornithine, D-diaminobutyric acid) contracts the macrocyclic ring, analogous to reducing ring size from 18-membered to 17-membered. The conformational analysis already shows that ring size controls cis/trans isomerism: 17-membered rings show two HPLC peaks while 18- and 19-membered rings give single sharp peaks. A contracted ring in the Tyr-Lys region, keeping the Phe-Asp segment unchanged, would test whether the rigid message segment can tolerate address-region preorganization without losing the binding contacts at MOR.
Why it matters
A single-conformer analog with equivalent sub-nanomolar MOR affinity would be a higher-quality pharmacological tool and a better lead for drug development, since isomeric mixtures complicate both mechanistic interpretation and regulatory development.
Plausibility.54
Novelty.65
Impact.62
Basis · grounding2 papers · 1 computed/note
[1]
paper
Phe-Xaa-Asp portion is rigid; Tyr-Lys region is flexible in MD; ring size controls isomerism (17-membered shows two peaks, 18/19-membered show one peak)
doi: 10.1016/j.bmc.2017.02.057
[2]
paper
Cyclic side-chain-linked analogs with varied linker lengths (cis/trans aminocyclohexyl-D-alanine) demonstrate that bridge geometry modulates receptor affinity and conformational homogeneity
doi: 10.1016/j.bmc.2014.10.022
[3]
noteFull scaffold described as a cycle-in-macrocycle with Tyr-D-Lys address and Phe-Phe-Asp message segments; cyclization via side-chain amide bridges
openupdated 2026-06-05

Could this compound, because it survives long enough in the body to reach the brain, hold withdrawal symptoms at bay after just one dose?

If this holds up in animal studies, it would point toward a new class of non-alkaloid compounds for managing opioid withdrawal. People going through withdrawal currently have very few options, and a molecule like this, derived from natural peptides rather than synthetic opioids, might open a different chemical path to treatment.

The hypothesis
The approximately 6-hour brain-homogenate half-life and demonstrated systemic bioavailability of this cyclic pseudo-tetrapeptide translate into a sufficiently long duration of antinociceptive action in vivo that it could suppress morphine withdrawal signs when administered as a single intraperitoneal dose in opioid-dependent mice.
Why it’s plausible
The compound is a sub-nanomolar MOR agonist (Ki 0.35 nM) with confirmed plasma stability sufficient to cross the blood-brain barrier after intraperitoneal dosing (Perlikowska 2016). Morphine withdrawal is driven by abrupt MOR underactivation, and long-acting MOR agonists that avoid rapid tolerance induction are used clinically for withdrawal management (e.g., buprenorphine). The compound's cyclic scaffold confers proteolytic resistance not available to linear endomorphins, and the roughly 6-hour half-life in brain homogenate exceeds that of endomorphin-2 substantially. Whether its receptor kinetics (residence time at MOR) differ from morphine's in a way that reduces tolerance is unknown but relevant.
Why it matters
A peptide-derived MOR agonist with built-in metabolic stability and BBB penetration could serve as a non-alkaloid pharmacological tool for dissecting withdrawal mechanisms, and points toward a chemical space for non-addictive withdrawal management.
Plausibility.38
Novelty.50
Impact.52
Basis · grounding2 papers · 1 computed/note
[1]
paper
Brain-homogenate half-life approximately 6 hours; approximately 498-fold longer than parent endomorphin-2 under the same conditions
doi: 10.1016/j.bmc.2011.10.040
[2]
paper
Antinociceptive activity confirmed after systemic intraperitoneal administration in mice
doi: 10.1016/j.ejmech.2015.12.012
[3]
noteCyclic scaffold introduced specifically to improve metabolic stability and enable systemic delivery relative to parent endomorphins
details expand to inspect
full evidence table1 metrics
metricvaluetool
EC50 6.607 nM GPCRDB/ChEMBL
structural qualityopenfold3
metricvaluenote
gpde0.746global PDE — lower = better
disorderNaNfraction disordered
3-letter notation
Phe-Phe-Asp
recipeboltz-2 1.0
parametervalue
modelboltz-2 1.0
weights
hardwarenvidia_nim_api
mlx version
python
random seed
msa strategynone
diffusion samples1
runtime
predicted bymlx@peptide
predicted at2026-04-24
citationbibtex
peptidemodel (2026). Pain-blocking opioid research peptide (CHEMBL1927270) (pep-10425, v1). PeptideModel. https://peptidemodel.com/card/pep-10425
@peptide{pep10425,
  sequence = {FFD},
  target   = {oprd1},
  author   = {peptidemodel},
  year     = {2026},
  status   = {bioassayed}
}
clinical trials 0 trials · checked 2026-05-22
0
no registered clinical trials as of 2026-05-22; we'll re-check periodically
references 5 papers
discussion no comments
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peptidemodel.com CC-BY-SA-4.0 research only · not for human use